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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45606850_45606979_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45606850 - 45606979
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCTAC
U12 Branch Point Sequence:
TTCTCCTCCATA
Flanking Amino Acid:
NFEWVAERVELLLKTKSQGR
Intron Amino Acid Position:
876

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
43.7
-0.4
1.2
35.7
31.8
Major PPT
77.2
0.61
0.7
72.8
25.6
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
55.9
0.18
2
71.19
41.6

Associated Gene:

Gene:
PAICS
Ensembl Gene ID:
ENSAPLG00000009439
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025618
45570984 - 45612102
41119
ENSAPLT00000022530
45570574 - 45609236
38663
ENSAPLT00000009901
45570984 - 45626029
55046
ENSAPLT00000028579
45570984 - 45612102
41119
ENSAPLT00000025625
45570984 - 45609236
38253