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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45608417_45609069_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45608417 - 45609069
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTAAC
U12 Branch Point Sequence:
GTGTAGGTAACG
Flanking Amino Acid:
DVWSSLRLPSGLGCPTTLSP
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
69.6
36.5
Major BPS
50.5
0.01
1.3
53.1
40.5
Major PPT
88.7
0.87
0.7
83.8
24.3
Minor 5ss
31.4
-2.1
3.1
36.2
41.7
Minor BPS
41.5
-0.7
2.7
52.78
47.5

Associated Gene:

Gene:
PAICS
Ensembl Gene ID:
ENSAPLG00000009439
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009901
45570984 - 45626029
55046
ENSAPLT00000028579
45570984 - 45612102
41119
ENSAPLT00000025625
45570984 - 45609236
38253
ENSAPLT00000025618
45570984 - 45612102
41119
ENSAPLT00000022530
45570574 - 45609236
38663