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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45616882_45617267_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45616882 - 45617267
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAAGA
5'SS Class:
major
3'SS Sequence:
GTTCTTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GATTCTTTATCT
Flanking Amino Acid:
ADIEYLEDVKVVDEKELKKL
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
64.3
41.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
70.2
0.46
0.9
63.9
38
Minor 5ss
44.5
-0.6
2.7
58.4
45.8
Minor BPS
69.3
0.69
1.6
81.99
39.3

Associated Gene:

Gene:
LONRF1
Ensembl Gene ID:
ENSAPLG00000009735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010134
45615199 - 45629871
14673