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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45617721_45618840_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45617721 - 45618840
Intron Length:
1120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTTG
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTGAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTCTTTTGAAG
Flanking Amino Acid:
IHAEETAEHSNLTKNVPMFV
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.5
39.9
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
80.6
0.69
1
82.5
26.5
Minor 5ss
49.2
-0
2.8
64.9
40.8
Minor BPS
56.6
0.06
1.5
64.42
37.4

Associated Gene:

Gene:
LONRF1
Ensembl Gene ID:
ENSAPLG00000009735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010134
45615199 - 45629871
14673