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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45620524_45620612_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45620524 - 45620612
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
CTTTCTTTGAAA
Flanking Amino Acid:
DGRNKHKKQGESTKRDTTLA
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
74.8
0.62
1
67
39.8
Major PPT
78.9
0.65
0.8
72.7
37.5
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
68.3
0.57
1.4
75.09
36.4

Associated Gene:

Gene:
LONRF1
Ensembl Gene ID:
ENSAPLG00000009735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010134
45615199 - 45629871
14673