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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45621434_45622154_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45621434 - 45622154
Intron Length:
721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAACTTGA
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
GTATTATGAACA
Flanking Amino Acid:
FLPAKLEVERTLCDVLSPEK
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
65.9
42.7
Major BPS
75.5
0.63
1
66
40.9
Major PPT
81.2
0.7
0.9
73.5
41.9
Minor 5ss
44.7
-0.6
2.6
49.9
46.3
Minor BPS
54.8
0.15
1.7
67.34
38.1

Associated Gene:

Gene:
LONRF1
Ensembl Gene ID:
ENSAPLG00000009735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010134
45615199 - 45629871
14673