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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45622278_45624612_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45622278 - 45624612
Intron Length:
2335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCATATTATCT
Flanking Amino Acid:
VISKMPSWPEVYFRKGKVLH
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79
0.65
0.9
76.6
36.9
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
51
0.11
1.9
73.37
43.4

Associated Gene:

Gene:
LONRF1
Ensembl Gene ID:
ENSAPLG00000009735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010134
45615199 - 45629871
14673