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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45624732_45629306_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45624732 - 45629306
Intron Length:
4575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
AATTACTAAAAA
Flanking Amino Acid:
LGAAGQALRADSSNLMLRIY
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
51.2
0.04
1.9
65.72
39.9

Associated Gene:

Gene:
LONRF1
Ensembl Gene ID:
ENSAPLG00000009735
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010134
45615199 - 45629871
14673