Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45738730_45741688_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

45738730 - 45741688

Intron Length:

2959

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGACAA

5'SS Class:

strong_major

3'SS Sequence:

TCCTTTTTCATAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

TAATATTCAATA

Flanking Amino Acid:

QCFNAVISIGVIHHFSTKQR

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

76.9

33.7

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

82.3

0.73

0.7

79.1

26.6

Minor 5ss

31.3

-2.1

38.6

46.4

Minor BPS

51.8

0.05

1.7

62.89

37.1

Associated Gene:

Gene:

TRMT9B

Ensembl Gene ID:

ENSAPLG00000009756

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026179

45713890 - 45742725

28836

ENSAPLT00000010154

45721216 - 45742725

21510