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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45768972_45769676_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45768972 - 45769676
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
AAATGTAGAACT
Flanking Amino Acid:
SEQAELAYKKACEGPPLRLW
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.9
36.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
77.3
0.61
0.9
69.7
41.3
Minor 5ss
50.2
0.01
2.5
68.8
42.2
Minor BPS
44.6
-0.3
2
62.63
40.9

Associated Gene:

Gene:
DLC1
Ensembl Gene ID:
ENSAPLG00000009900
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022613
45767686 - 46023063
255378
ENSAPLT00000010733
45767686 - 45978841
211156
ENSAPLT00000010333
45766686 - 45803305
36620