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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45771163_45771519_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45771163 - 45771519
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TCCCCTGTGAAG
Flanking Amino Acid:
NTLKRENSSPRVMQRKPSLG
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.4
31.7
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
62
0.27
1.1
62.8
32
Minor 5ss
43.7
-0.7
3
61.2
43.7
Minor BPS
41.9
-0.7
2.1
44.29
42.2

Associated Gene:

Gene:
DLC1
Ensembl Gene ID:
ENSAPLG00000009900
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022613
45767686 - 46023063
255378
ENSAPLT00000010733
45767686 - 45978841
211156
ENSAPLT00000010333
45766686 - 45803305
36620