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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45774726_45776665_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45774726 - 45776665
Intron Length:
1940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTTGCTTAAAT
Flanking Amino Acid:
YTPSNKHGFSWAVPKFMKRI
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
68.5
36.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
69.6
0.44
1
66.9
38.4
Minor 5ss
29.6
-2.3
3.5
35.6
42.2
Minor BPS
67.8
0.64
1.9
85.06
41.4

Associated Gene:

Gene:
DLC1
Ensembl Gene ID:
ENSAPLG00000009900
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022613
45767686 - 46023063
255378
ENSAPLT00000010733
45767686 - 45978841
211156
ENSAPLT00000010333
45766686 - 45803305
36620