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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45779322_45782262_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45779322 - 45782262
Intron Length:
2941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CATGCATTATTT
Flanking Amino Acid:
KLEISPHRKRSEDSDEDEPC
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
93.2
0.97
0.6
89.1
19.8
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
48.2
-0
2
65.93
44.9

Associated Gene:

Gene:
DLC1
Ensembl Gene ID:
ENSAPLG00000009900
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022613
45767686 - 46023063
255378
ENSAPLT00000010733
45767686 - 45978841
211156
ENSAPLT00000010333
45766686 - 45803305
36620