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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_45782327_45789243_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45782327 - 45789243
Intron Length:
6917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTCTCTTAATA
Flanking Amino Acid:
LDRDAIEALCRRLNTLNKCA
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
86.2
0.81
0.8
80.4
31.5
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
80
0.94
1
84.43
28.5

Associated Gene:

Gene:
DLC1
Ensembl Gene ID:
ENSAPLG00000009900
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022613
45767686 - 46023063
255378
ENSAPLT00000010733
45767686 - 45978841
211156
ENSAPLT00000010333
45766686 - 45803305
36620