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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4582296_4584317_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4582296 - 4584317
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTTACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCTCCTCTTACT
Flanking Amino Acid:
EFVTSHEAGPAAVLIVESSQ
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1.2
78.8
35.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
71.8
0.49
0.8
66
34.5
Minor 5ss
30.7
-2.2
3.1
42.2
44.4
Minor BPS
50.8
0.11
2
74.37
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006363
4542362 - 4619845
77484