About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4584431_4619672_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4584431 - 4619672
Intron Length:
35242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATTT
Flanking Amino Acid:
RMWGLAKRLFREHPSQPKCQ
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
67.8
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87
0.83
0.7
85.9
27.9
Minor 5ss
29.9
-2.3
3.3
38.1
46.8
Minor BPS
66
0.58
1.5
81.3
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006144
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006363
4542362 - 4619845
77484