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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_459505_460110_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
459505 - 460110
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
CTTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TGCTTGGTAAAA
Flanking Amino Acid:
NGTDVVVDLQGWVTGNGKGL
Intron Amino Acid Position:
1133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
89.1
0.88
0.6
84.6
23.2
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
41.9
-0.6
2.5
56.32
43

Associated Gene:

Gene:
ALPK1
Ensembl Gene ID:
ENSAPLG00000013490
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038111
420710 - 460307
39598
ENSAPLT00000014057
421131 - 460307
39177
ENSAPLT00000014051
420456 - 460307
39852