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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46030253_46043027_R

Intron Information:

Intron Rank:
155500
Intron Class:
major
Intron Phase:
Intron Coordinates:
46030253 - 46043027
Intron Length:
12775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
ACACCTCTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
78
0.63
0.7
71.7
26.3
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
44.8
-0.4
1.8
51.78
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031156
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045703
46027494 - 46043830
16337