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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46070703_46086991_F

Intron Information:

Intron Rank:
137634
Intron Class:
major
Intron Phase:
Intron Coordinates:
46070703 - 46086991
Intron Length:
16289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTATACTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
85.5
0.8
0.8
80.2
31.5
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
78.2
0.96
1.4
90.18
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024123
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044826
46070620 - 46092245
21626