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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46087227_46091003_F

Intron Information:

Intron Rank:
137635
Intron Class:
major
Intron Phase:
Intron Coordinates:
46087227 - 46091003
Intron Length:
3777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTCTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
73.4
37.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.2
0.61
1
76
38.1
Minor 5ss
39.7
-1.2
3.1
56
48.1
Minor BPS
66.3
0.59
1.6
82.83
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024123
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044826
46070620 - 46092245
21626