About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46093348_46093949_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46093348 - 46093949
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TTCTCCATATAT
Flanking Amino Acid:
VFTLVAIAVDRFRCIVYPFK
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
78.6
0.64
0.9
72.9
37.4
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
54.6
0.22
2
78.32
43.5

Associated Gene:

Gene:
NPFFR2
Ensembl Gene ID:
ENSAPLG00000010316
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010751
46092513 - 46095137
2625