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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46094050_46094809_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46094050 - 46094809
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCAG
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCAATAGCC
Flanking Amino Acid:
PTTLLDNIIAGWPFGSMVCK
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
61.5
44.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
86.2
0.81
0.8
77.7
36.7
Minor 5ss
43.3
-0.7
2.9
55.3
48.9
Minor BPS
50.3
-0
2.1
71.63
38.8

Associated Gene:

Gene:
NPFFR2
Ensembl Gene ID:
ENSAPLG00000010316
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010751
46092513 - 46095137
2625