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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46128192_46128913_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46128192 - 46128913
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTCTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
ATATCCTGAATT
Flanking Amino Acid:
AQWKAGPWSECSVTCGEGTE
Intron Amino Acid Position:
990

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
39.5
Major BPS
69.6
0.49
1
59.5
39
Major PPT
70.7
0.47
0.9
64.7
36.6
Minor 5ss
30.6
-2.2
3.4
39.1
46.7
Minor BPS
73.8
0.83
1.3
84.68
35.3

Associated Gene:

Gene:
ADAMTS3
Ensembl Gene ID:
ENSAPLG00000010333
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010792
46122631 - 46246145
123515
ENSAPLT00000039550
46122255 - 46243549
121295