About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46129523_46130270_R


Intron Information:

Intron Rank:
18

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
46129523 - 46130270

Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAAACAGA

5'SS Class:
strong_major

3'SS Sequence:
AAATATGTTCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTCTGAA

U12 Branch Point Sequence:
TTTTCCTGACTT

Flanking Amino Acid:
WSQCSKPCGGGFQYTKYGCR

Intron Amino Acid Position:
876

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
80.1
0.71
1
71.3
40.5

Major BPS
69.8
0.49
1
61
37.5

Major PPT
65.9
0.36
1.1
55
48.5

Minor 5ss
38.1
-1.3
3
49.1
46.7

Minor BPS
69.4
0.69
1.7
88.83
36.2

Associated Gene:

Gene:
ADAMTS3

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

46122631 - 46246145
123515

46122255 - 46243549
121295