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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46140488_46141034_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46140488 - 46141034
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTCCA
5'SS Class:
major
3'SS Sequence:
TTCTCTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGTTCTCTATTT
Flanking Amino Acid:
FGVGYKMCTAFRTFDPCKQL
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
64.6
41.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
87
0.83
0.7
85.2
27.8
Minor 5ss
41.1
-1
2.7
51.6
44.8
Minor BPS
54.7
0.23
1.9
77.23
39.6

Associated Gene:

Gene:
ADAMTS3
Ensembl Gene ID:
ENSAPLG00000010333
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039550
46122255 - 46243549
121295
ENSAPLT00000010792
46122631 - 46246145
123515