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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46142140_46142911_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46142140 - 46142911
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
GCTCTTATAACC
Flanking Amino Acid:
AFVVAHETGHVLGMEHDGQG
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71
40.9
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
89
0.88
0.8
87.9
29.5
Minor 5ss
39.8
-1.1
3
51.1
45.2
Minor BPS
51.3
0.02
1.6
60.92
38.2

Associated Gene:

Gene:
ADAMTS3
Ensembl Gene ID:
ENSAPLG00000010333
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010792
46122631 - 46246145
123515
ENSAPLT00000039550
46122255 - 46243549
121295