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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46146873_46158216_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46146873 - 46158216
Intron Length:
11344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTATTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
QNYLLTLMNIVNEIYHDESL
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
0.9
76.8
31.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
89
0.88
0.7
88.3
28.7
Minor 5ss
36.7
-1.5
2.9
47.4
36.1
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
ADAMTS3
Ensembl Gene ID:
ENSAPLG00000010333
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039550
46122255 - 46243549
121295
ENSAPLT00000010792
46122631 - 46246145
123515