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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46250475_46251299_R

Intron Information:

Intron Rank:
153906
Intron Class:
major
Intron Phase:
Intron Coordinates:
46250475 - 46251299
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
AAATTATTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
80.7
0.69
0.9
76.3
32.2
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
49.2
0.02
2
69.52
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030293
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042122
46250447 - 46253969
3523