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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46251434_46253433_R

Intron Information:

Intron Rank:
153907
Intron Class:
major
Intron Phase:
Intron Coordinates:
46251434 - 46253433
Intron Length:
2000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACGA
5'SS Class:
strong_major
3'SS Sequence:
CACACTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTGTCCTGAGTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
64.4
41.6
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
67.5
0.4
1
57.1
42.9
Minor 5ss
31.5
-2.1
3.1
36.3
42.5
Minor BPS
60.8
0.33
1.7
72.31
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030293
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042122
46250447 - 46253969
3523