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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46276296_46278026_R

Intron Information:

Intron Rank:
154471
Intron Class:
major
Intron Phase:
Intron Coordinates:
46276296 - 46278026
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
ACTTGTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
82.6
0.73
0.9
76
37.4
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
50.4
0
2.1
64.86
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030633
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048171
46276066 - 46278824
2759
ENSAPLT00000030167
46274221 - 46278543
4323