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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46367651_46368461_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46367651 - 46368461
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TGTCTTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
GGTGGCTGAACT
Flanking Amino Acid:
MIPVAATVPSSMALYWLSSS
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
82
0.72
0.9
76.5
37.5
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
50
0.08
2
70.56
45.7

Associated Gene:

Gene:
COX18
Ensembl Gene ID:
ENSAPLG00000010688
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011125
46367156 - 46373214
6059