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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46368570_46369620_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46368570 - 46369620
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATAACT
Flanking Amino Acid:
LGLLNLLIVEIFASQKMEVS
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
71.4
41.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.3
0.75
0.7
80.8
24.4
Minor 5ss
45.7
-0.5
2.5
58.3
46.4
Minor BPS
68.3
0.65
1.5
85.33
34.5

Associated Gene:

Gene:
COX18
Ensembl Gene ID:
ENSAPLG00000010688
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011125
46367156 - 46373214
6059