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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46369734_46370667_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46369734 - 46370667
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCTGC
5'SS Class:
major
3'SS Sequence:
ATTTTTGTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATACTTAATT
Flanking Amino Acid:
NCSVGALNSEVKEQFSTGGT
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
62.1
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
81.1
0.7
0.9
74
41
Minor 5ss
38.8
-1.3
3
50.7
45.8
Minor BPS
71.9
0.77
1.5
81.85
39.7

Associated Gene:

Gene:
COX18
Ensembl Gene ID:
ENSAPLG00000010688
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011125
46367156 - 46373214
6059