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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46370832_46371548_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46370832 - 46371548
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATTA
Flanking Amino Acid:
KQLGWSDKVARFHFKRNLRR
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
100
1.24
0.5
100
0
Major PPT
72.5
0.51
1.1
75.6
31.9
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
65.6
0.49
1.8
80.59
35.2

Associated Gene:

Gene:
COX18
Ensembl Gene ID:
ENSAPLG00000010688
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011125
46367156 - 46373214
6059