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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46380746_46381738_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46380746 - 46381738
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TGTTCCTAAATG
Flanking Amino Acid:
LLPPCSSASNESPAQSVSSG
Intron Amino Acid Position:
1882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
81.6
0.71
0.8
77.3
31.5
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
67.8
0.42
1.7
71.98
41.2

Associated Gene:

Gene:
ANKRD17
Ensembl Gene ID:
ENSAPLG00000010793
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011282
46375400 - 46419563
44164