About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46380746_46383768_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46380746 - 46383768
Intron Length:
3023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TGTTCCTAAATG
Flanking Amino Acid:
PLQRPAPSPSESPAQSVSSG
Intron Amino Acid Position:
1816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
81.6
0.71
0.8
77.3
31.5
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
67.8
0.42
1.7
71.98
41.2

Associated Gene:

Gene:
ANKRD17
Ensembl Gene ID:
ENSAPLG00000010793
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018047
46375400 - 46419563
44164