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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46381937_46383768_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46381937 - 46383768
Intron Length:
1832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
ATTTCTCTCATA
Flanking Amino Acid:
PLQRPAPSPSGIVSMDSPYA
Intron Amino Acid Position:
1816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
78.3
0.64
0.8
73.4
30.9
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
50.7
0.02
2
70.03
36.7

Associated Gene:

Gene:
ANKRD17
Ensembl Gene ID:
ENSAPLG00000010793
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011282
46375400 - 46419563
44164