About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46389812_46390948_R


Intron Information:

Intron Rank:
18

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
46389812 - 46390948

Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAGATTG

5'SS Class:
strong_major

3'SS Sequence:
TTTATCATTTTAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTATCAT

U12 Branch Point Sequence:
ATTTCTTCAAAT

Flanking Amino Acid:
MRYIATITDKEMLKKCHLCM

Intron Amino Acid Position:
919

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
91.8
0.99
0.8
81.6
33.2

Major BPS
88.2
0.95
0.9
88.3
28.5

Major PPT
80.9
0.69
0.8
78.9
34.1

Minor 5ss
41.6
-0.9
3.1
55.7
48.5

Minor BPS
67.4
0.62
1.6
84.22
36

Associated Gene:

Gene:
ANKRD17

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

46375400 - 46419563
44164

46375400 - 46419563
44164