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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46392801_46393898_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46392801 - 46393898
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTGTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTGCTTGTCATA
Flanking Amino Acid:
RKANVEHRAKTGLTPLMEAA
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
72.8
0.51
0.9
68.3
37.5
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
41.9
-0.6
2.2
55.11
39

Associated Gene:

Gene:
ANKRD17
Ensembl Gene ID:
ENSAPLG00000010793
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018047
46375400 - 46419563
44164
ENSAPLT00000011282
46375400 - 46419563
44164