About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46396589_46397689_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46396589 - 46397689
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTATTTATCT
Flanking Amino Acid:
IYPAIDIDAQTESNHDTALT
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.4
0.73
0.8
81.2
30.8
Minor 5ss
41.5
-0.9
3.1
55.8
48.4
Minor BPS
58.9
0.36
1.8
76.69
39.6

Associated Gene:

Gene:
ANKRD17
Ensembl Gene ID:
ENSAPLG00000010793
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018047
46375400 - 46419563
44164
ENSAPLT00000011282
46375400 - 46419563
44164