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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46405539_46407055_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46405539 - 46407055
Intron Length:
1517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCACACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTTTTTCACA
Flanking Amino Acid:
VATTLPIRNKAASKQKSSSH
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.8
38.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.8
0.69
0.8
76.6
31
Minor 5ss
35.6
-1.6
3
50.5
45.8
Minor BPS
62.5
0.39
1.7
73.92
38.7

Associated Gene:

Gene:
ANKRD17
Ensembl Gene ID:
ENSAPLG00000010793
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018047
46375400 - 46419563
44164
ENSAPLT00000011282
46375400 - 46419563
44164