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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46408410_46409408_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46408410 - 46409408
Intron Length:
999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
VCTVQFLISKGANVNRTTAN
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.1
0.61
1
78.6
33.6
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
ANKRD17
Ensembl Gene ID:
ENSAPLG00000010793
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018047
46375400 - 46419563
44164
ENSAPLT00000011282
46375400 - 46419563
44164