Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46408688_46411550_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

46408688 - 46411550

Intron Length:

2863

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCCATGAAG

5'SS Class:

major

3'SS Sequence:

CTTGGAGTGTTAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTAACAT

U12 Branch Point Sequence:

GCTAACATACCA

Flanking Amino Acid:

YTPLMEAAREVQVVFLLFLE

Intron Amino Acid Position:

133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.2

60.2

44.6

Major BPS

58.7

0.22

1.2

Major PPT

56.9

0.16

1.1

54.7

44.9

Minor 5ss

16.8

-3.8

3.4

22.1

37.2

Minor BPS

43.8

-0.4

55.02

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028470

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036886

46408611 - 46424189

15579