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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46411730_46419316_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
46411730 - 46419316
Intron Length:
7587

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCCTTTGCT
5'SS Class:
major
3'SS Sequence:
TGGAAGTGGCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTGGAA
U12 Branch Point Sequence:
CTCTTCGTAGGA
Flanking Amino Acid:
TLACYKGIVPRLLLDSGAQV
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.3
69.6
39.7
Major BPS
48.8
-0
1.5
49.1
46.3
Major PPT
44.6
-0.3
1.2
33.4
45
Minor 5ss
26.6
-2.7
3.9
42.3
44.4
Minor BPS
42
-0.6
2.3
53.69
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028470
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036886
46408611 - 46424189
15579