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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46419488_46424142_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
46419488 - 46424142
Intron Length:
4655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTTACTCTT
5'SS Class:
weak_major
3'SS Sequence:
AATCAGGTGCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
ACTGCTGGAATC
Flanking Amino Acid:
FLLYLLEFGQYIEDHNENGH
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.2
0.08
1.3
60.3
44.2
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
49.5
-0
1.1
39.7
43.7
Minor 5ss
43.9
-0.7
2.9
62.4
36.6
Minor BPS
43.6
-0.5
2.1
52.6
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028470
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036886
46408611 - 46424189
15579