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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46465441_46489194_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
46465441 - 46489194
Intron Length:
23754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTAACATTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
72
39.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.8
0.83
0.6
85.9
21
Minor 5ss
31.8
-2.1
3.5
46.7
48.6
Minor BPS
62.2
0.46
1.6
76.21
39.8

Associated Gene:

Gene:
ALB
Ensembl Gene ID:
ENSAPLG00000010999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047423
46465279 - 46498836
33558