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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46491143_46492047_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46491143 - 46492047
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCAGC
5'SS Class:
major
3'SS Sequence:
ATGTCCCTCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATAATTTTAACT
Flanking Amino Acid:
EDAPECSKSLPSIFLDEICQ
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
59.8
45.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
68.7
0.42
0.8
63
33.7
Minor 5ss
38.5
-1.3
3.2
48.4
42.9
Minor BPS
69.9
0.7
1.2
79.63
36

Associated Gene:

Gene:
ALB
Ensembl Gene ID:
ENSAPLG00000010999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047423
46465279 - 46498836
33558
ENSAPLT00000011533
46489195 - 46499224
10030