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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46492263_46492802_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46492263 - 46492802
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTCTTATAG
Flanking Amino Acid:
YEDNRVSFLGHFIYSVARRN
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71
34.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
88.3
0.86
0.6
84.2
23.9
Minor 5ss
35
-1.7
3
46.1
42.9
Minor BPS
63.5
0.29
1.8
72.21
40.6

Associated Gene:

Gene:
ALB
Ensembl Gene ID:
ENSAPLG00000010999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047423
46465279 - 46498836
33558
ENSAPLT00000011533
46489195 - 46499224
10030