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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46493780_46494545_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46493780 - 46494545
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
ATTCTCTGTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTC
Flanking Amino Acid:
KKFGDRIFQADKLALLSQKY
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.1
34.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.7
0.62
0.9
69.8
40.9
Minor 5ss
41.8
-0.9
2.8
49.1
41.3
Minor BPS
72.6
0.69
1.5
81.59
33

Associated Gene:

Gene:
ALB
Ensembl Gene ID:
ENSAPLG00000010999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011533
46489195 - 46499224
10030
ENSAPLT00000047423
46465279 - 46498836
33558