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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_46497309_46497837_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46497309 - 46497837
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TATCTCTCACCA
Flanking Amino Acid:
DRRLPCSEGYLSMVIQDMCR
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.8
29.6
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
74.4
0.55
0.9
67.4
38.7
Minor 5ss
33
-1.9
2.7
39.4
38.9
Minor BPS
50.8
0.02
1.8
66.13
40

Associated Gene:

Gene:
ALB
Ensembl Gene ID:
ENSAPLG00000010999
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047423
46465279 - 46498836
33558
ENSAPLT00000011533
46489195 - 46499224
10030